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논문 기본 정보
- 자료유형
- 학술저널
- 저자정보
- 저널정보
- 한국미생물생명공학회 Journal of Microbiology and Biotechnology Journal of Microbiology and Biotechnology 제25권 제10호
- 발행연도
- 2015.1
- 수록면
- 1,599 - 1,605 (7page)
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The development of rapid and efficient genome sequencing methods has enabled us to study the evolutionary background of bacterial genetic information. Here, we present comparative genomic analysis of 17 Streptomyces species, for which the genome has been completely sequenced, using the pan-genome approach. The analysis revealed that 34,592 ortholog clusters constituted the pan-genome of these Streptomyces species, including 2,018 in the core genome, 11,743 in the dispensable genome, and 20,831 in the unique genome. The core genome was converged to a smaller number of genes than reported previously, with 3,096 gene families. Functional enrichment analysis showed that genes involved in transcription were most abundant in the Streptomyces pan-genome. Finally, we investigated core genes for the sigma factors, mycothiol biosynthesis pathway, and secondary metabolism pathways; our data showed that many genes involved in stress response and morphological differentiation were commonly expressed in Streptomyces species. Elucidation of the core genome offers a basis for understanding the functional evolution of Streptomyces species and provides insights into target selection for the construction of industrial strains.
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참고문헌 (24)
참고문헌 신청
Bentley SD / 2002 / Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2) / Nature 417 : 141 ~ 147
Bibb MJ / 2005 / Regulation of secondary metabolism in streptomycetes / Curr. Opin. Microbiol 8 : 208 ~ 215
Binnewies TT / 2006 / Ten years of bacterial genome sequencing:comparative-genomics-based discoveries / Funct. Integr. Genomics 6 : 165 ~ 185
Bursy J / 2008 / Synthesis and uptake of the compatible solutes ectoine and 5-hydroxyectoine by Streptomyces coelicolor A3(2) in response to salt and heat stresses / Appl. En
Cane DE / 2003 / Expression and mechanistic analysis of a germacradienol synthase from Streptomyces coelicolor implicated in geosmin biosynthesis / Proc. Natl. Acad. Sci. USA
Bibb MJ / 2005 / Regulation of secondary metabolism in streptomycetes / Curr. Opin. Microbiol 8 : 208 ~ 215
Binnewies TT / 2006 / Ten years of bacterial genome sequencing:comparative-genomics-based discoveries / Funct. Integr. Genomics 6 : 165 ~ 185
Bursy J / 2008 / Synthesis and uptake of the compatible solutes ectoine and 5-hydroxyectoine by Streptomyces coelicolor A3(2) in response to salt and heat stresses / Appl. En
Cane DE / 2003 / Expression and mechanistic analysis of a germacradienol synthase from Streptomyces coelicolor implicated in geosmin biosynthesis / Proc. Natl. Acad. Sci. USA
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